Excellent source of how-to videos on image analysis with Cell Profiler

youtube channel

A searchable database of resources for light microscopists

website with links

Online image analysis course. Includes YouTube videos and links to exercises.

youtube channel

A video illustration of Köhler illumination on a basic upright compound microscope.

YouTube video

Microcourses are short educational videos on a variety of light microscopy topics, brought to you by a team of microscopists from Harvard Medical School.

YouTube channel

Slides and example datasets from a 5 session workshop on bioimage analysis.

powerpoints; text files; image files

Articles and web resources targeted to core facility directors and personnel.

online bibliography w links

A primer on a wide variety of microscopy and optical imaging techniques.

website; text and java tutorials

Useful microscopy links from the Microscopy Services Laboratory at UNC

webpage with links

A variety of 3D visualization and analysis tutorials using Imaris.

webinars

Abbreviated links and instructions for using QuPath. Supplemental to 'From Samples to Knowledge Workshop 2020'

documentation from website

Instructional videos for the Leica SP8 confocal microscope system.

multiple videos

Quick overview of how samples are mounted for the Zeiss Lightsheet Z.1 and 7

video

Software and hardware training tutorials for Leica Microsystems products

video

Microscopy lectures and tutorial videos from the Microscopy Services Laboratory at the University of North Carolina at Chapel Hill

multiple videos

A microscopy education website sponsored by Nikon Instruments

website; text and java tutorials

QuPath is open source analysis software for digital pathology applications and more!

website; software tutorials

Workshop on the use of QuPath: an open, powerful, flexible, extensible software platform for whole slide image analysis.

video tutorials

An archive of presentations from the 2020 Fiji Image Processing and Analysis Workshop.

course materials

User forum for software-oriented aspects of scientific imaging, particularly (but not limited to) image analysis, processing, acquisition, storage, and management of digital scientific images.

Imaging discussion forum

User forum focusing on hardware, acquisition, and specimen-related aspects of scientific imaging.

Imaging discussion forum

FPbase is a free and open-source, community-editable database for fluorescent proteins (FPs) and their properties. The primary objective is to aggregate structured and searchable FP data that is of interest to the imaging community and FP developers.

web resource

Basic image analysis course for life scientists with a non-engineering background.

online course

Powerpoint presentation covering basic principles, hardware and software for SMLM by Siân Culley

Powerpoint

Course material aimed at facility staff working with the DeltaVision OMX 3D structured illumination microscope (3D-SIM)

pdf; course materials

A repository of presentation material from the 2019 MICRON Advanced Microscopy Course at the University of Oxford

pdfs; course materials

Tutorials on image processing/analysis in Fiji/ImageJ from Robert Haase

videos

A free, comprehensive course covering a range of topics including the basics of optics, transmitted light, fluorescence, cameras and image processing.

video

An overview of the practice and principles of microscopy digital image handling. This series follows the life cycle of an image data set, from acquisition to analysis.  It teaches important concepts and best practices, and provides examples.

video

MySCOPE is an online learning environment that provides insights into the fundamental science behind different microscopy techniques.

hardware tutorials with simulator

Complete user training videos for the Carl Zeiss LSM 880 with Airyscan.

four videos

Series of videos covering basic microscopy through advanced techniques.

video tutorials

Demonstration of the ultra microtome machine that cuts thin samples, thin enough to be usable for transmission electron microscopy. The machine, different knives and techniques are demonstrated.

videos with detailed demos

Leica video with music, no voiceover using UC7 microtome

videos with detailed demos

An instructional video on how to trim resin blocks with an ultramicrotome.

videos with detailed demos

A short video showing how to stain ultra-thin sections for TEM imaging

videos with detailed demos

Procedure for negative staining in TEM

videos with detailed demos

This video describes how to prepare a sample for use with a scanning electron microscope. Specifically, the Hatachi TM3000 model of desktop SEM.

videos with detailed demos

A tutorial on preparing ultra-thin sections for TEM microscopy.

video

Tutorials for a variety of instruments from Leica Microsystems

youtube channel

Official YouTube channel for Carl Zeiss Microscopy

youtube channel

How to clean optical components of a microscope by Nikon Instruments.

youtube video

Official YouTube channel for Nikon Instruments

youtube playlist

A collection of online microscopy resources compiled by the Royal Microscopy Society

organization website

An international network of imaging communities (including BINA!)

organization website